Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015865095.1_cds_XP_016516218.1_28482
CDS Infomation

[gene=LOC107832838] [db_xref=GeneID:107832838] [protein=synaptotagmin-1-like] [protein_id=XP_016516218.1] [location=join(28560..28670,29806..29904,30002..30052,30317..30440,30549..30667,30773..30874,31090..31164,31259..31335,31470..31716,31800..32150,32358..32489,32576..32707)] [gbkey=CDS]
Sequence

ATGGGATTCATAAGCACAATATTGGGATTCTTCGGATTTGGAATGGGGATCGTGATCGGG
CTAGTGATCGGCTATTTCCTCTTCATCTACGTTCTACCAACTGATGTCAAGCATCCTGAT
ATTCGGCCCTTGGCGGAGCAAGATACTGAAAGCCTGCAACGGCTGCTCCCTGAGATACCA
CTTTGGGTTAAAAATCCAGATTATGATCGCCTTGATTGGCTCAATAAAATGATCGAACTC
ATGTGGCCTTATTTAGACAAGGCTATTTGTAAAACAGCAAAAGGTATAGTCGATCCCATC
ATAGCTGAGCAGATTCCACATTACAAAATTGAGTCAGTTGAATTTCAATCATTCACCTTA
GGCACCCTGCCACCTACATTTCCAGGAATGAAGGTCTATATCACTGAGGAGAAAGAGCTA
ATAATGGAACCAGTCATTAAGTGGGCAGCTAATCCAAACATCACTATTGCAGTAAAGGCA
TTTGGGTTGAAAGCCACTGCTCAGGTGGTTGACTTGCAAATATTTGCCTTACCTCGAATC
ACCTTGAAGCCACTGGTTCCAACCTTTCCTTGTTTCGCAAAGATATATGTATCTCTTATG
GAGAAGCCTCATGTCGATTTTGGACTAAAACTTCTCGGTGCAGATGCAATGTCCATTCCT
GGCCTGTACAGATTTGTTCAAGAGATTATCAAAGATCAAGTTGCAAATATGTATCTATGG
CCAAAAACACTTGAGGTCCAAATATTGGATCCTTCAAAAGCAATGAAGAGGCCAGTTGGA
ATTCTTAATGTGACAGTTGTGAGGGCAATGAAGCTTAAAAAGACAGATCTTTTGGGGCTC
TCAGACCCCTTTGTGAAACTAAAAATTATGGATGACAAACTATCATCAAAGAAAACATCA
GTGAAGCACAAAAACTTGAACCCAGAATGGAACGAAGAATTTAGTTTCGTGGTTAAGGAT
CCAGAAACTCAAGTCTTAAAATTTTCTGTTTATGACTGGGAGCAGGTTGGCTCACATGAA
AAAATGGGTGTGAATATTTTGCCATTGAAAGATCTTACTCCAGATGAACCAAAAGTATTG
ACACTAGAACTTCTGAAAAACTTAAAACCAGATGATGTTCAAAATGAAAAAGCAAGAGGA
CAGCTTGTACTTGAAGTGATGTACAAAGCTTTTAACGATGAAGAACTCGCAAATGGCGCT
GACGAATCAGGTACGGTAGAGAAGGCTCCTGATGGAACACCTGAGGGCGGAGGTATGCTC
GTAGTTATTGTCCATGAAGGTCAAGATCTTGAAGGAAAGCACCACACAAATCCATCTGTT
CGTCTGCTCTTCAGAGGGGAAGAGAGAAGAACTAAGGTTATAAAGAAAAACAGAGATCCA
AGGTGGGAAGAGGAGTTTCAGTTTGTATTGGAGGAACCACCTGTAAATGATAGGATTCAT
GTAGAAGTTGTTAGTACTTCAAAAAGAATGGGTCTTCGACATCCCAAGGAAGCTTTGGGT
TACGTGGATGTGTACCTCGCCGATGTTGTGAACAACAAGAGAATTAATGAGAGATACCAT
CTTATTGACTCGAAGAATGGTCGACTTCAGATCGAGCTACAATGGAGAACTGCATCTTGA

Peptide Sequence

PEP ID

XP_016516218.1
PEP Infomation

PREDICTED: synaptotagmin-1-like [Nicotiana tabacum]
Sequence

MGFISTILGFFGFGMGIVIGLVIGYFLFIYVLPTDVKHPDIRPLAEQDTESLQRLLPEIP
LWVKNPDYDRLDWLNKMIELMWPYLDKAICKTAKGIVDPIIAEQIPHYKIESVEFQSFTL
GTLPPTFPGMKVYITEEKELIMEPVIKWAANPNITIAVKAFGLKATAQVVDLQIFALPRI
TLKPLVPTFPCFAKIYVSLMEKPHVDFGLKLLGADAMSIPGLYRFVQEIIKDQVANMYLW
PKTLEVQILDPSKAMKRPVGILNVTVVRAMKLKKTDLLGLSDPFVKLKIMDDKLSSKKTS
VKHKNLNPEWNEEFSFVVKDPETQVLKFSVYDWEQVGSHEKMGVNILPLKDLTPDEPKVL
TLELLKNLKPDDVQNEKARGQLVLEVMYKAFNDEELANGADESGTVEKAPDGTPEGGGML
VVIVHEGQDLEGKHHTNPSVRLLFRGEERRTKVIKKNRDPRWEEEFQFVLEEPPVNDRIH
VEVVSTSKRMGLRHPKEALGYVDVYLADVVNNKRINERYHLIDSKNGRLQIELQWRTAS

Transcript Sequence

Gene sequence data has not been registered.